Asst. Prof. Dr. rer. nat. Apichat Suratanee

Position : Assistant Professor
Contact
  • Address : 78-1004, 10th floor, Faculty of Applied Science, King Mongkut’s University of Technology
    North Bangkok (KMUTNB).
  • Tel : 02-555-2000 ext.4524 / 02-587-8258
  • E-Mail : apichat.s@sci.kmutnb.ac.th
Education

2012:

Dr. rer. nat. in Computer Science, Ruprecht-Karls-Universität Heidelberg, Germany.

Dissertation Title: “Computational Analysis of RNAi Screening Data to Identify Host

Factors Involved in Viral Infection and to Characterize Protein-Protein Interactions”.

2004:

M.Sc. in Computational Science, Chulalongkorn University, Thailand.

Thesis Title: “Simulation and Visualization of Soybean Growth Affected by Different

Amount of Nitrogen, Phosphorus and Potassium”.

2001:

B.Sc. in Mathematics, Srinakharinwirot University, Thailand.

Expertise and Experience

Professional experiences :

08/2006 - present: Lecturer, Department of Mathematics, Faculty of Applied Science,

King Mongkut’s University of Technology North Bangkok, Bangkok,

Thailand.

10/2009 - 10/2012: Member of Heidelberg Graduate School of Mathematical and

Computational Methods of the Sciences (HGS MathComp),

Interdisciplinary Center for Scientific Computing (IWR) of

Universität Heidelberg, Germany.

08/2008 – 10/2012: Performing Bioinformatics Research at

- Department of Bioinformatics and Functional Genomics,

Institute of Pharmacy and Molecular Biotechnology (IPMB),

University of Heidelberg, Germany, and

- Division of Theoretical Bioinformatics (B080),

German Cancer Research Center (DKFZ), Germany.

08/2008 - 10/2012: Doctoral student at Faculty of Mathematics and Computer Science,

University of Heidelberg.

10/2006 - 08/2008: Short term student at University of Heidelberg and performing

research at Department of Bioinformatics and Functional Genomics,

Institute of Pharmacy and Molecular Biotechnology (IPMB),

University of Heidelberg, Germany.

04/2005 - 09/2006: Programmer, The Black Tiger Shrimp Genome Project, Chulalongkorn

University, Bangkok, Thailand.

05/2004 - 10/2004: Lecturer at Department of Mathematics, Faculty of Applied Science,

King Mongkut’s University of Technology North Bangkok, Bangkok,

Thailand.

05/2001 - 09/2006: Research Assistant at Advanced Virtual and Intelligent Computing

Research Center, Chulalongkorn University, Bangkok, Thailand.

11/2001 - 02/2002: Teaching Assistant at Department of Mathematics, Faculty of Science,

Chulalongkorn University, Bangkok, Thailand.

Research

Research Interests:
Bioinformatics, Machine learning, Data Mining, Pattern recognition, Plant modeling.

Selected Publications :
A. Suratanee and K. Plaimas (2017). "Reverse Nearest Neighbor Search on a Protein-Protein
Interaction Network to Infer Protein-Disease Associations", Bioinformatics and Biology
Insights, 11, doi: 10.1177/1177932217720405.
C. Chornkrathok, A. Suratanee, T. Buaboocha, S. Chadchawan, and K. Plaimas (2016).
"Characterization of Clustering Coefficient for Signed Weighted Gene Co-Expression
Network", Proceedings of 7th International Conference in Mathematics and Applications
(ICMA-MU 2016), the Centre of Excellence in Mathematics, December 17-19, pp. 21-30.
S. Kitsiranuwat, K. Plaimas, and A. Suratanee (2016). "Characterizing Network Topology of
Disordered Proteins in Protein Interaction Networks", Proceedings of 7th International Conference
in Mathematics and Applications (ICMA-MU 2016), the Centre of Excellence in Mathematics, December 17-19, pp. 59-67.
Pajaree Sonsungsan, Kitiporn Plaimas, Apichat Suratanee, Chulee Yompakdee, and Sittiruk
Roytrakul (2016). "Boolean Model For Analysing The Effect of A Coumarin Compound
from Clausena Harmandiana in Jurkat T Cell Line", Mae Fah Luang University
International Conference 2016 on Advance in Medical and Health Sciences, pp. 43-49.
A. Suratanee and K.Plaimas (2015). "DDA: A Novel Network-Based Scoring Method to
Identify Disease-Disease Associations", Bioinformatics and Biology Insights, 9, pp. 175-186.
A. Suratanee, M. H. Schaefer, M. J. Betts, Z. Soons, H. Mannsperger, N. Harder, M.
Oswald, M. Gipp, E. Ramminger, G. Marcus, R. Männer, K. Rohr, E. Wanker, R. B. Russell,
M. A. Andrade-Navarro, R. Eils, and R. König (2014), "Characterizing Protein Interactions
Employing a Genome-Wide siRNA Cellular Phenotyping Screen", PLOS Computational
Biology, 10(9): e1003814. doi:10.1371/journal.pcbi.1003814.
A. Suratanee and K. Plaimas (2014). "Identification of inflammatory bowel disease-related
proteins using a reverse k-nearest neighbor search". Journal of Bioinformatics and
Computational Biology, Vol. 12, No. 4. DOI: 10.1142/S0219720014500176.
M. Gipp, G. Marcus, N. Harder, A. Suratanee, K. Rohr, R. König, R. Männer (2012).
“Haralicks Texture Features Computation Accelerated by GPUs for Biological Applications”.
In H.G. Bock, X.P. Hoang, R.Rannacher, J.P. Schlöder (Eds.), Modeling, Simulation and
Optimization of Complex Processes (pp. 127-138). March 2-6, 2009, Hanoi, Vietnam:
Springer.
A. Suratanee, I. Rebhan, P. Matula, A. Kumar, L. Kaderali, K. Rohr, R. Bartenschlager, R.
Eils, R. König. (2010). “Detecting host factors involved in virus infection by observing the
clustering of infected cells in siRNA screening images”. Bioinformatics (Oxford Journal),
2010 Sep 15, Vol. 26(18), pp. i653-8.
M. Gipp, G. Marcus, N. Harder, A. Suratanee, K. Rohr, R. König, R. Männer (2009).
“Haralick's Texture Features Computed by GPUs for Biological Applications”. IAENG
International Journal of Computer Science, 2009, Vol. 36(1), 2009.
M. Gipp, G. Marcus, N. Harder, A. Suratanee, K. Rohr, R. König, and R. Männer (2008).
“Accelerating the computation of Haralick's Texture Features using Graphics Processing
Units (GPUs)”, Proc. World Congress on Engineering 2008 (WCE'08) (pp. 587-593), The
2008 Internat. Conf. of Parallel and Distributed Computing (ICPDC'08), London, UK, July
2-4, 2008, Newswood Limited, International Association of Engineers 2008.
A. Suratanee, K. Na Nakornphanom, K.Plaimas, C.Lursinsap (2008). “Partitioning for High
Performance of Predicting Dynamical Behavior of Color Diffusion in Water using 2-D tightly
Coupled Neural Cellular Network”. In H.G. Bock, E. Kostina, H.X. Phu, R. Rannacher
(Eds.), Modeling, Simulation and Optimization of Complex Processes (pp. 565-574). March
6-10, 2006, Hanoi, Vietnam: Springer.
K. Plaimas, C. Lursinsap, A. Suratanee (2005). “High Performance of Artificial Neural
Network of Resolving Ambiguous Nucleotide Problem”, 19th IEEE International Parallel
and Distributed Processsing Symposium (IPDPS-2005), April 2005, Denver, Colorado, USA.
A.Suratanee, S.Siripant, C.Lursinsap, and K.Plaimas. (2005). “Simulation and Visualization
Of Soybean Growth Affected By Different Amount of Primary Nutrient”, The Northeastern
Computer Science and Engineering Conference (NECSEC2005), 31 March-1 April, 2005,
Khon Kaen, Thailand.
A. Suratanee, S. Siripant, and C. Lursinsap (2004). “Modeling the Soybean Growth in
Different Amount of Nitrogen, Phosphorus, and Potassium Using Neural Network”,
Proceedings of the 4th International Workshop on Functional-Structural Plant Models, pp.
130-133, 2004, France.

Book Chapter and Academic Writing (In Thai):
อภิชาต ศุรธณี. (2559). เอกสารประกอบการสอนวิชา คณิตศาสตร์สําหรับปัญญาประดิษฐ์ รหัสวิชา 423356
Mathematics for Artificial Intelligence. กรุงเทพฯ: มหาวิทยาลัยเทคโนโลยีพระจอมเกล้าพระนครเหนือ.
อภิชาต ศุรธณี. (2558). "การระบุความสัมพันธ์ของโรคโดยใช้ดัชนีความสัมพันธ์". วารสารวิทยาศาสตร์
ประยุกต์. ปีที่ 14 ฉบับที่ 1 หน้า 68-77.
อภิชาต ศุรธณี. (2556). "โครงสร้างแบบแฮช (Hashing in Data Structure)". เอกสารการสอนชุดวิชา
โครงสร้างข้อมูลและขั้นตอนวิธี (Data Structures and Algorithms) สาขาวิชาวิทยาศาสตร์และเทคโนโลยี
มหาวิทยาลัยสุโขทัยธรรมาธิราช. นนทบุรี: โรงพิมพ์สุโขทัยธรรมาธิราช.
อภิชาต ศุรธณี. (2556) "ขั้นตอนวิธีเวียนเกิดและย้อนรอย (Recursive and Backtracking Algorithm)".
เอกสารการสอนชุดวิชา โครงสร้างข้อมูลและขั้นตอนวิธี (Data Structures and Algorithms) สาขาวิชา
วิทยาศาสตร์และเทคโนโลยี มหาวิทยาลัยสุโขทัยธรรมาธิราช. นนทบุรี: โรงพิมพ์สุโขทัยธรรมาธิราช.

Academic Articles
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